Making conStruct Input Files

  • May 2, 2018
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As part of my postdoc with Gideon Bradburd, I’m using his new software package conStruct (bioRxiv; GitHub) to analyze dozens of genomic datasets.  conStruct requires three input files: 1) genetic data, 2) coordinate data (longitude in the first column, latitude in the second), and 3) a pairwise distance matrix with the same number of sites […]

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BayesAss for RADseq Data

I want to use BayesAss on a large SNP dataset generated with RADseq.  But I found out when I went to convert the data into the .immaq format that my favorite converter, PGDspider, would only convert the first 40 loci.  I didn’t get 10,000s of loci for nothing, so that wasn’t going to work.  But […]

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